SARS-CoV-2 Genome analysis pipeline

This platform provide an automatic pipeline for variants identification and annotation of SARS-CoV-2. The platform uses well-established methods from BWA, QualiMap, SAMtools, SAMTOOLS, BCFTOOLS to SNPEFF

The program takes the fastq file as input and executes the steps of variants identification and annotation, it also generate a consensus sequence using bam and vcf files.

Please import the FASTQ file